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Title: Computational Molecular Biology: An Algorithmic Approach (Computational Molecular Biology) by Pavel A. Pevzner ISBN: 0-262-16197-4 Publisher: MIT Press Pub. Date: 21 August, 2000 Format: Hardcover Volumes: 1 List Price(USD): $52.00 |
Average Customer Rating: 4 (5 reviews)
Rating: 5
Summary: The title says it...
Comment: An excellent book for studying computational molecular biology from an algorithmic perspective. (But if you never took mathematics seriously, you are forewarned.)
Rating: 3
Summary: Good book, but the back cover lies....
Comment: As others have noted, the premise that this book is for beginners from either the computational or the biological field is flawed...unless one's definition of beginner is a lot more advanced than mine.
For example even chapter one throws out terms like "recombination" and electrophoresis. without enough explanation for the biology newbie, IMO. Heck, for someone truly new to biology, a bit of time explaining what a chromosome is is probably time well spent.
And for the person coming from a pure biology background, some of the mathematics will definitely be a problem unless they have a decent understanding of combinatorics and discrete mathematics. And that "computational biology without formulas" blurb on the back cover should be read as "not as many formulas as I could have included if I really wanted", rather than "no formulas at all". There are equations galore in this book, rest assured of that.
That said, if a person *does* have the necessary background to make the material accessbile, then the book is definitely worth the purchase. The book's failure is in defining its target audience, not in the material presented.
Rating: 4
Summary: computational
Comment: While this is certainly the do-loop of computational biology the reader would question the assertion that this book provides a common link (no pun) between the biologists need for computational expertise and the programmer's need for biological insight. In either case a solid basis in Discrete Mathematics goes along way here (usually a required course for computer science majors). This reader thinks a similar required course in genetics should be made for engineers to reduce their reductionistic tendencies. However the distinction between these lines grows narrower with each new computer chip. None the less the book is well written, and easy to read (as Discrete Math stuff goes). This book is not for beginners in either Combinatorics or genetics and the last part of the book poses many current questions that as the author says, "are just currently being answered". This book already assumes you know about such things as NIH, PDB, Chime, Isis, NCIB, docking, etc. For those less adapt at programming (myself) the following alternatives are fun, useful and to the point. Both trees and networks can be easily set up in MathCad using their built in resource center add-ins for Combinatorics and Set Theory. They also provide a Traveling Salesman routine in Numerical Recipes that can be applied directly to the problems in Pevzner's book. (Although remembering that most optimization algorithms provide only the most probable 100 out of 2 million it is still fun!). Most of the mappings and node process familiar to Discrete Math can be solved using Mathcad and some sort of adjacency matrix combination. (Including the four-color mapping problem). This provides the basis for most nodal mappings. For the more daring the adjacency matrices can be run through Matlab's GUI's decompositions and analyzed using their optimization toolbox. Currently I'm investigating the Hidden Markovian chains using the Frame advance feature of Mathcad applied to 2D cspline- intercept graphing and updating by frame iteration. This book is for the serious student or solid course material in a related field, and while probably not rated in top ten novels of 2000 certainly rates five mouse clicks from this reader.
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Title: Biological Sequence Analysis : Probabilistic Models of Proteins and Nucleic Acids by Richard Durbin, Sean R. Eddy, Anders Krogh, Graeme Mitchison ISBN: 0521629713 Publisher: Cambridge University Press Pub. Date: 01 July, 1999 List Price(USD): $45.00 |
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Title: Algorithms on Strings, Trees, and Sequences: Computer Science and Computational Biology by Dan Gusfield ISBN: 0521585198 Publisher: Cambridge University Press Pub. Date: 15 January, 1997 List Price(USD): $75.00 |
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Title: Introduction to Computational Biology: Maps, Sequences and Genomes by Michael S. Waterman ISBN: 0412993910 Publisher: CRC Press Pub. Date: 01 June, 1995 List Price(USD): $69.95 |
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Title: Bioinformatics: Sequence and Genome Analysis by David W. Mount ISBN: 0879696087 Publisher: Cold Spring Harbor Laboratory Pub. Date: 15 March, 2001 List Price(USD): $75.00 |
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Title: Computational Molecular Biology: An Introduction by Peter Clote, Rolf Backofen ISBN: 0471872520 Publisher: John Wiley & Sons Pub. Date: 22 September, 2000 List Price(USD): $75.00 |
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